PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G115200.1
Common NameB456_001G115200, LOC105791844
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 384aa    MW: 42549.8 Da    PI: 9.0603
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G115200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012143166123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg++F  ++ L++H+ t H
  Gorai.001G115200.1 143 FPCTACGEVFQKPHFLEQHQATkH 166
                         89******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.827143171IPR007087Zinc finger, C2H2
PROSITE patternPS000280145166IPR007087Zinc finger, C2H2
SuperFamilySSF563997.39E-14168382No hitNo description
Gene3DG3DSA:3.90.228.105.5E-6316382IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAKPNFGSFF NKFLSLFILL LHLGCFIFTA KDHQKPPKKR KHSPLSPSSP SHKPHANKSL  60
SSTWSYLKRI FTSSKANCRN TIPTHPRAAL TPALTSARNS QQSLVSMVIP PETHLSETSL  120
PPPHPESDIS SDNPFSPLRN DIFPCTACGE VFQKPHFLEQ HQATKHAVSQ LLDGDSGKNI  180
VRIIFKTGWT DKVRNPEIHR ILKIHNSPKI LARFEEYREL VKAKAARNGA VVGRRDERCI  240
ADGNELLRFY CSTFMCDLGL NGSSGICSQQ YCSVCGIIKS GFSPKMDGIS TLSTSWRAHM  300
AVPEDVEEEF KFMNVKRAML VCRVVAGRVG SEGDETNKED GGFDSVIGRG GGNMAHHTKV  360
DEEELLVFNP RAVLPCFVIV YTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13440KPPKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475552.10.0PREDICTED: uncharacterized protein LOC105791844
TrEMBLA0A0D2LXH40.0A0A0D2LXH4_G
STRINGPOPTR_0001s25700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]